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History: r_test

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Preview of version: 29

R_test intends to be an easy way of testing PluginR development (http://dev.tikiwiki.org/PluginR) on advanced usage, where a basic pretty tracker workflow is needed for users to upload a file with data to be processed, and an page with a program in R language has to process it and produce some output for that user.

There are 3 sets of tests for the time being:
  • Test1. Testing procedure to process csv file with data through an R script in a wiki page, by means of submitting a new tracker item with that csv file as attachment.
  • Test2. Testing many basic R commands with good and wrong syntaxes. some of them include Pretty Tracker display through .tpl file on disk as template.
  • Test3. Testing the process of allowing the user to chose some params to be used in some simple R script.
  • Test4 (to be implemented yet). Testing the process of allowing the user to edit some params of a graph produced by some simple R script.


These pages will be created:


YAML
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preferences:
 feature_trackers: y
 feature_user_watches: y 
 wikiplugin_r: y
 instructions: Profile_r_test1_page
objects:
 -
  type: tracker
  ref: r_test_tracker1
  data:
   name: Datasets
   description: Standard dataset tracker
   default_status: open
   show: [ status, creation_date, modification_date, list_modification_date ]
   allow: [ comments, attachments ]
 -
  type: tracker_field
  ref: r_test_summary
  data:
   name: Summary
   tracker: $r_test_tracker1
   type: text_field
   flags: [ searchable, public, list, mandatory, link ]
   order: 10
 -
  type: tracker_field
  ref: r_test_description
  data:
   name: Description
   tracker: $r_test_tracker1
   type: text_area
   options: 1
   flags: [ public, mandatory ]
   order: 20
 -
  type: tracker_field
  ref: r_test_from
  data:
   name: From user
   tracker: $r_test_tracker1
   type: user
   flags: [ searchable, public, list ]
   order: 30
 -
  type: tracker_field
  ref: r_test_attachment
  data:
   name: Dataset file
   tracker: $r_test_tracker1
   type: attachment
   flags: [ searchable, public, list ]
   order: 40
 -
  type: tracker_field
  ref: r_test_xmin
  data:
   name: Minimum value for axis X
   tracker: $r_test_tracker1
   type: text_field
   flags: [ searchable, public, list, mandatory, link ]
   order: 50
 -
  type: tracker_field
  ref: r_test_xmax
  data:
   name: Maximum value for axis X
   tracker: $r_test_tracker1
   type: text_field
   flags: [ searchable, public, list, mandatory, link ]
   order: 60


Groups & Permissions

YAML
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permissions:
 Anonymous:
  allow: [ view ]
  deny: [ ]
 Registered:
  description: Will be ignored because group is already created
  allow:
   - create_tracker_items
   - list_trackers
   - view_trackers
   - watch_trackers
  deny: [  ]
 Editors:
  description: Trusted users
  allow:
   - modify_tracker_items
 Admins:
  description: Have all rights
  allow: [ admin ]



Sample data


YAML
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objects:
 -
  type: tracker_item
  ref: dataset_001
  data:
   tracker: $r_test:r_test_tracker1
   status: open
   values:
    - [ $r_test:r_test_summary, Sample dataset ]
    - [ $r_test:r_test_from, admin ]
    - [ $r_test:r_test_description, "This dataset was created as part of the sample data for r_test." ]
    - [ $r_test:r_test_attachment, ]
    - [ $r_test:r_test_xmin, 1]
    - [ $r_test:r_test_xmax, 10]
 -
  type: tracker_item
  ref: dataset_002
  data:
   tracker: $r_test:r_test_tracker1
   status: pending
   values:
    - [ $r_test:r_test_summary, We are working on this dataset ]
    - [ $r_test:r_test_from, admin ]
    - [ $r_test:r_test_description, "This will soon be changed" ]
    - [ $r_test:r_test_attachment, ]
    - [ $r_test:r_test_xmin, 21]
    - [ $r_test:r_test_xmax, 30]
 -
  type: tracker_item
  ref: dataset_003
  data:
   tracker: $r_test:r_test_tracker1
   status: closed
   values:
    - [ $r_test:r_test_summary, A really old dataset ]
    - [ $r_test:r_test_from, admin ]
    - [ $r_test:r_test_description, "This dataset is outdated." ]
    - [ $r_test:r_test_attachment, ]
    - [ $r_test:r_test_xmin, 100]
    - [ $r_test:r_test_xmax, 110]


Modules

YAML
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objects:
 -
  type: module
  ref: module_last_modif_tracker_items
  data:
   name: last_modif_tracker_items
   groups: [ Anonymous, Registered ]
   position: right
   order: 5
   params:
    trackerId: $r_test:r_test_tracker1
    name: Summary



Wiki pages


YAML
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instructions: r_test
preferences:
  enable: [ feature_wiki ]
objects:
  -
    type: wiki_page
    ref:  r_test1_page
    data:
      name: r_test1
      description: Interface to send datasets
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test1_page
  -
    type: wiki_page
    ref:  r_test1_analysis_page
    data:
      name: r_test1_analysis
      description: Interface to show the results from the analysis
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test1_analysis
  -
    type: wiki_page
    ref:  r_test2_page
    data:
      name: r_test2
      description: Interface to send datasets
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test2
  -
    type: wiki_page
    ref:  r_test2_template01_page
    data:
      name: r_test2_template01
      description: Template for smarty tpl on disk
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test2_template01
  -
    type: wiki_page
    ref:  r_test3_page
    data:
      name: r_test3
      description: Interface to change graph params and display png
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test3
  -
    type: wiki_page
    ref:  r_test3_template01_page
    data:
      name: r_test3_template01
      description: Template for wiki page
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test3_template01


Useful navigational aid

Module wiki side menu

YAML
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objects:
 -
  type: module
  ref: module_menupage
  data:
   name: menupage
   position: right
   groups: [ Anonymous, Registered ]
   order: 2
   params:
    pagemenu: $r_test_menupage_include


Wiki Page for the Menu

This will add the page Profile_r_test_menupage as the menu content

YAML
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objects:
  -
    type: wiki_page
    ref: r_test_menupage_include
    data:
      name: Menu
      description: Collaborative simple menu
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test_menupage


Extra features enabled for this wiki side menu

Add smileys for an easy way to add icons for bullets in the wiki page menu, without making them too much on the right.
YAML
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preferences:
 feature_smileys: y
 wikiplugin_img: y
 wikiplugin_div: y
 wikiplugin_listpages: y
 wikiplugininline_div: y
 wikiplugininline_img: y
 wikiplugininline_listpages: y


Todo

  • add attachment field
  • send to page with R program to process the data in the attId

Links

History

Information Version
Fri 14 of Oct, 2016 09:17 GMT-0000 Xavi (as xavidp - admin) Mass search and replace 119
Wed 05 of Feb, 2014 04:44 GMT-0000 dirschneid Image Plugin modified by editor. 118
Fri 31 of Jan, 2014 18:57 GMT-0000 Xavi (as xavidp - admin) added r_test12_ecoengine 117
Fri 31 of Jan, 2014 10:38 GMT-0000 Xavier de Pedro remove users 116
Sun 19 of Jan, 2014 12:09 GMT-0000 Xavier de Pedro updated test names and added desc for test11 115
Sun 19 of Jan, 2014 12:04 GMT-0000 Xavier de Pedro added Profile_r_test11_animation 114
Tue 07 of Jan, 2014 14:17 GMT-0000 Xavier de Pedro improved page title also in profiles.t.o 113
Tue 07 of Jan, 2014 14:04 GMT-0000 Xavier de Pedro wikiplugin_aname added since it's used in some wiki page 112
Tue 07 of Jan, 2014 13:56 GMT-0000 Xavier de Pedro fixed the name of 512paths to avoid issues with <strong> tags in some rare cases 111
Tue 07 of Jan, 2014 13:50 GMT-0000 Xavier de Pedro renamed pages to include two digits in the numbering 110
Tue 07 of Jan, 2014 13:27 GMT-0000 Xavier de Pedro added r_test_10_clickme 109
Mon 23 of Dec, 2013 17:18 GMT-0000 Xavier de Pedro added feature_jquery_media 108
Thu 19 of Dec, 2013 11:30 GMT-0000 Xavier de Pedro updated with 512paths as test9 subpage and r_test7 showing a plot.ly test 107
Wed 18 of Dec, 2013 14:36 GMT-0000 Xavier de Pedro updated info 106
Tue 17 of Dec, 2013 17:13 GMT-0000 Xavier de Pedro added the new r_test9_charts pages 105
Tue 17 of Dec, 2013 16:58 GMT-0000 Xavier de Pedro added r_test9 104
Fri 18 of Oct, 2013 10:05 GMT-0000 Xavier de Pedro layout and typo 103
Fri 18 of Oct, 2013 10:04 GMT-0000 Xavier de Pedro added test8. thks jyhem and joël 102
Sat 31 of Aug, 2013 08:02 GMT-0000 Xavier de Pedro updated 101
Tue 11 of Jun, 2013 07:53 GMT-0000 Xavier de Pedro stop changing sefurl in the local tiki site to prevent issues in sites where no htaccess nor rewrite rules has been enabled 100
Fri 31 of May, 2013 10:02 GMT-0000 Xavier de Pedro tweaks 99
Sat 25 of May, 2013 14:44 GMT-0000 Xavier de Pedro added sef feature for r_test3 98
Fri 10 of May, 2013 15:25 GMT-0000 Xavier de Pedro added r_test7 97
Thu 09 of May, 2013 10:06 GMT-0000 Xavier de Pedro updated to sync current tests 96
Thu 15 of Nov, 2012 01:00 GMT-0000 Xavier de Pedro typo 95