History: r_test

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            R_test intends to be an easy way of testing PluginR development ([http://dev.tikiwiki.org/PluginR]) on advanced usage, where a basic pretty tracker workflow is needed for users to upload a file with data to be processed, and an page with a program in R language has to process it and produce some output for that user. 

These pages will be created:
{TITLESEARCH(search="r_test",exclude="r_test",noheader="1")}{TITLESEARCH}

{CODE(caption=>YAML,wrap=>0)}
preferences:
 feature_trackers: y
 feature_user_watches: y 
 wikiplugin_r: y
 instructions: Profile_r_test1_dataset_page
objects:
 -
  type: tracker
  ref: r_test1_tracker
  data:
   name: Datasets
   description: Standard dataset tracker
   default_status: open
   show: [ status, creation_date, modification_date, list_modification_date ]
   allow: [ comments, attachments ]
 -
  type: tracker_field
  ref: r_test_summary
  data:
   name: Summary
   tracker: $r_test1_tracker
   type: text_field
   flags: [ searchable, public, list, mandatory, link ]
   order: 10
 -
  type: tracker_field
  ref: r_test_description
  data:
   name: Description
   tracker: $r_test1_tracker
   type: text_area
   options: 1
   flags: [ public, mandatory ]
   order: 20
 -
  type: tracker_field
  ref: r_test_from
  data:
   name: From user
   tracker: $r_test1_tracker
   type: user
   flags: [ searchable, public, list ]
   order: 30
 -
  type: tracker_field
  ref: r_test_attachment
  data:
   name: Dataset file
   tracker: $r_test1_tracker
   type: attachment
   flags: [ searchable, public, list ]
   order: 40
 -
  type: tracker_field
  ref: r_test_xmin
  data:
   name: Minimum value for axis X
   tracker: $r_test1_tracker
   type: text_field
   flags: [ searchable, public, list, mandatory, link ]
   order: 50
 -
  type: tracker_field
  ref: r_test_xmax
  data:
   name: Maximum value for axis X
   tracker: $r_test1_tracker
   type: text_field
   flags: [ searchable, public, list, mandatory, link ]
   order: 60
{CODE}

! Groups & Permissions
{CODE(caption=>YAML, wrap=1)}
permissions:
 Anonymous:
  allow: [ view ]
  deny: [ ]
 Registered:
  description: Will be ignored because group is already created
  allow:
   - create_tracker_items
   - list_trackers
   - view_trackers
   - watch_trackers
  deny: [  ]
  objects:
   -
    type: wiki
    id: $content:wikicontent:Profile_r_test3_template01
    allow: [ use_as_template ]
 Editors:
  description: Trusted users
  allow:
   - modify_tracker_items
 Admins:
  description: Have all rights
  allow: [ admin ]
{CODE}


! Sample data

{CODE(caption=>YAML,wrap=>1)}
objects:
 -
  type: tracker_item
  ref: dataset_001
  data:
   tracker: $r_test1_tracker:r_test1_tracker
   status: open
   values:
    - [ $r_test1_tracker:r_test_summary, Sample dataset ]
    - [ $r_test1_tracker:r_test_from, admin ]
    - [ $r_test1_tracker:r_test_description, "This dataset was created as part of the sample data for r_test." ]
    - [ $r_test1_tracker:r_test_attachment, ]
    - [ $r_test1_tracker:r_test_xmin, 1]
    - [ $r_test1_tracker:r_test_xmax, 10]
 -
  type: tracker_item
  ref: dataset_002
  data:
   tracker: $r_test1_tracker:r_test1_tracker
   status: pending
   values:
    - [ $r_test1_tracker:r_test_summary, We are working on this dataset ]
    - [ $r_test1_tracker:r_test_from, admin ]
    - [ $r_test1_tracker:r_test_description, "This will soon be changed" ]
    - [ $r_test1_tracker:r_test_attachment, ]
    - [ $r_test1_tracker:r_test_xmin, 21]
    - [ $r_test1_tracker:r_test_xmax, 30]
 -
  type: tracker_item
  ref: dataset_003
  data:
   tracker: $r_test1_tracker:r_test1_tracker
   status: closed
   values:
    - [ $r_test1_tracker:r_test_summary, A really old dataset ]
    - [ $r_test1_tracker:r_test_from, admin ]
    - [ $r_test1_tracker:r_test_description, "This dataset is outdated." ]
    - [ $r_test1_tracker:r_test_attachment, ]
    - [ $r_test1_tracker:r_test_xmin, 100]
    - [ $r_test1_tracker:r_test_xmax, 110]

{CODE}

! Modules
{CODE(caption=>YAML)}
objects:
 -
  type: module
  ref: module_last_modif_tracker_items
  data:
   name: last_modif_tracker_items
   groups: [ Anonymous, Registered ]
   position: right
   order: 5
   params:
    trackerId: $r_test1_tracker:r_test1_tracker
    name: Summary
{CODE}


!!Add a form to add dataset report and a report of open datasets

This will include: ((Profile_r_test1_dataset_page))

{CODE(caption=>YAML)}
instructions: r_test
preferences:
  enable: [ feature_wiki ]
objects:
  -
    type: wiki_page
    ref:  r_test_page1
    data:
      name: r_test1
      description: Interface to send datasets
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test1_dataset_page
  -
    type: wiki_page
    ref:  r_test1_analysis
    data:
      name: r_test1_analysis
      description: Interface to show the results from the analysis
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test1_analysis
  -
    type: wiki_page
    ref:  r_test_page2
    data:
      name: r_test2
      description: Interface to send datasets
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test2
  -
    type: wiki_page
    ref:  r_test_page2_template01
    data:
      name: r_test2_template01
      description: Template for smarty tpl on disk
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test2_template01
  -
    type: wiki_page
    ref:  r_test_page3
    data:
      name: r_test3
      description: Interface to change graph params and display png
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test3
  -
    type: wiki_page
    ref:  r_test_page3_template01
    data:
      name: r_test3_template01
      description: Template for wiki page
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test3_template01
{CODE}

!! Useful navigational aid
!!! Module wiki side menu
{CODE(caption=>YAML,wrap=>1)}
objects:
 -
  type: module
  ref: module_menupage
  data:
   name: menupage
   position: right
   groups: [ Anonymous, Registered ]
   order: 2
   params:
    pagemenu: $r_test_menupage_include
{CODE}

!!! Wiki Page for the Menu
This will add the page ((Profile_r_test_menupage)) as the menu content

{CODE(caption=>YAML,wrap="1")}
objects:
  -
    type: wiki_page
    ref: r_test_menupage_include
    data:
      name: Menu
      description: Collaborative simple menu
      lang: en
      mode: create_or_update
      content: wikicontent:Profile_r_test_menupage
{CODE}

!!! Extra features enabled for this wiki side menu 
Add smileys for an easy way to add icons for bullets in the wiki page menu, without making them too much on the right. 
{CODE(caption=>YAML,wrap="1")}
preferences:
 feature_smileys: y
 wikiplugin_img: y
 wikiplugin_div: y
 wikiplugin_listpages: y
 wikiplugininline_div: y
 wikiplugininline_img: y
 wikiplugininline_listpages: y
{CODE}

!!Todo
* add attachment field
* send to page with R program to process the data in the attId

-=Links=-
* [http://dev.tikiwiki.org/PluginR]
* [http://r-project.org]
* [http://mods.tikiwiki.org/details.php?type=wikiplugins&mod=r]